Upcoming Events
Apr
29
Microbial Detection Using Machine Learning on Aerosol Mass Spectrometry
Kyle Regan
PhD candidate, Bioinformatics Data Science program
CBCB, University of Delaware
April 29, 2024 | 3:30 PM
Ammon-Pinizzotto Biopharmaceutical Innovation (BPI) Building
Conference Room 140
Exploring machine learning models to maximize the predictive potential of omics data in mAb-producing CHO cells
Guna Gurazada
PhD candidate, Bioinformatics Data Science program
CBCB, University of Delaware
April 29, 2024 | 4:00 PM
Ammon-Pinizzotto Biopharmaceutical Innovation (BPI) Building
Conference Room 140
Past Events
Apr
22
tRNA gene set evolution
Miguel Pedraza
MS graduate student, Bioinformatics and Data Science program
University of Delaware
April 22, 2024
Mechanisms of cell size homeostasis and consequences for proliferation and gene expression
Cesar Augusto Nieto Acuna
Post-Doctoral Researcher
University of Delaware
April 22, 2024
Apr
15
Heavy metal neuroscience: Tracking somatosensory development with single-cell mass cytometry
Dr. Austin Keeler
Assistant Professor, Biological Sciences
University of Delaware
April 15, 2024
Apr
08
Examining early stage psychosis through structural equation modeling and multimodal analysis
Kristina Holton
PhD in Bioinformatics Data Science
April 8, 2024
Identification of the substrates and targets of ADAM9 in colorectal cancer using multi-omics integration
Neha Sindhu
Ph.D. candidate in Bioinformatics Data Sciences
Center for Bioinformatics and Computational Biology
University of Delaware
April 8, 2024
Apr
01
We are not alone: the role of the intestinal microbiome in the setting of sepsis
Nathan Klingensmith, MD
Assistant Professor
Division of Traumatology, University of Pennsylvania
April 1, 2024
Mar
18
Mar
11
Study of disease comorbidity based on incomplete human interactome with machine learning
Li Liao, PhD
Associate Professor
Computer and Information Sciences Department
University of Delaware
March 11, 2024
Mar
04
Functional Annotation of Glycan Motifs via Glycosylation Enzymes and the GlyGen GlycoTree Sandbox
Nathan Edwards, PhD
Associate Professor
Department of Biochemistry and Molecular & Cellular Biology, and
Clinical and Translational Glycoscience Research Center
Georgetown University
March 4, 2024
Feb
26
Exploring Disease Mechanisms through Gene Expression Analysis: Case Studies on Autoimmune Thyroid Disease and Prader-Willi Syndrome
Karen Ross, PhD
Associate Professor, Department of Biochemistry and Molecular & Cellular Biology
Senior Bioinformatics Scientist in the Protein Information Resource
Georgetown University Medical Center
February 26, 2024
Feb
19
Individual Development Plans (IDPs) for Graduate Students
Amelia Harrison
Academic Advisor
CBCB Program, University of Delaware
February 19, 2024
Bacteriophage Alchemy: Turning Genotypic Data into Phenotypic Gold
Dr. Shawn Polson
Associate Professor, Departments of Computer and Information Sciences, Biological Sciences, and Plant and Soil Sciences
University of Delaware
February 19, 2024
Feb
12
CBCB and Department of Medical and Molecular Sciences Joint seminar: Understanding the Epigenomic and Transcriptomic Basis of Retinal Adaptations to Diet and Lifestyle
Anupam Kumar Mondal, Ph.D.
Neurobiology, Neurodegeneration and Repair Laboratory,
National Eye Institute, National Institutes of Health, Bethesda, MD.
February 12, 2024
Feb
05
Effective Presentation Strategies Workshop
Oral Communication Consultants of the University of Delaware Writing Center
February 5, 2024
Dec
11
Engineering Root Systems for Climate Resilience
Erin Sparks
Associate Professor, Plant and Soil Sciences Department
Delaware Biotechnology Institute
University of Delaware
December 11, 2023
Dec
04
KSFinder – a Model to Predict Kinases of Phosphorylated Substrates, Its Enhancement, and Applications in Human Diseases
Manju Anandakrishnan
PhD Student, Bioinformatics Data Science Program
CBCB, University of Delaware
December 4, 2023
How Computational Techniques Can Improve CAR-T Therapy
Andrew Fennimore
MS Student Bioinformatics and Computational Biology, CBCB
University of Delaware
December 4, 2023
Nanopore CapZyme-Seq, a method for detecting and quantifying metabolite caps on RNA
Venkata Sai Vaishnavi Prathivadi Bhayankaram
MS Student, Bioinformatics and Computational Biology, CBCB
University of Delaware
December 4, 2023
Nov
27
Breaking Symmetry: Asymmetric Histone Inheritance
Xin Chen, PhD
HHMI Investigator, Professor
The Johns Hopkins University, Department of Biology
November 27, 2023
Nov
13
Regional-scale microbiome analysis of distinct ecosystems: leveraging phylogenetic and functional genes
Alexa Bennett
PhD student, Bioinformatics Data Sciences Program, University of Delaware
November 13, 2023
Web tool to visualize the global injury response of lens epithelial cells
Suhotro Gorai
PhD student, Bioinformatics Data Sciences Program, University of Delaware
November 13, 2023
Challenges and Opportunities in Continuous Biomanufacturing
Rachel Swamy
MS Student, Bioinformatics and Computational Biology, University of Delaware
November 13, 2023
Nov
06
Lineage tracing and spatiotemporal analyses of HSV-I infection reveals heritable host-intrinsic factors dictating viral susceptibility and IFN-I production in the skin
Laura Van Eyndhoven, PhD
Post-doctoral researcher, Department of Bioengineering, University of Pennsylvania
November 6, 2023
Oct
30
Prediction of 10-Year Risk for Future Coronary Heart Disease using Machine Learning Algorithms
Anagha Gardane
MS student, Bioinformatics and Computational Biology Program
October 30, 2023
Responder Vs Non-Responder Analysis at a Subject level of the LILAC study Part A (SLE), a 2-Part, Phase 2, Randomized, Double Blind Placebo Controlled Study
Charitha Sumeet
MS student, Bioinformatics and Computational Biology Program
October 30, 2023
Unraveling T-cell and endothelial cell interactions through computational analyses
Krithika Umesh
MS student, Bioinformatics and Computational Biology Program
October 30, 2023
Oct
23
Applying Large Language Models to Biomedicine
Qiao Jin, PhD
Post doctoral researcher, BioNLP group
NCBI/NLM/NIH
October 23, 2023
Oct
16
Exploring Motor Control Deficits in Parkinson’s Disease: Insights from MRI Studies
Roxana Burciu, PhD
Assistant Professor, Department of Kinesiology and Applied Physiology
University of Delaware
Director of the Motor Neuroscience and Neuroimaging Laboratory and Parkinson’s Disease Registry
October 16, 2023
Oct
09
Hard Microbiology: The microbiome of concrete
Julia Maresca, PhD
Associate Professor, Civil and Environmental Engineering
University of Delaware
October 9, 2023
Oct
02
Utilizing and Evaluating Different BERT Models to Predict Patients’ Length of Stay (LOS) and Mortality by Leveraging Only the Initial Nursing Note Assessments
Saad Althabiti
Bioinformatics Data Science PhD Student
University of Delaware
October 2, 2023
Leveraging ClinicalBERT for Hospital Readmission Prediction Using Clinical Notes and Discharge Summaries
Omar Alharbi
Bioinformatics Data Science PhD student
University of Delaware
October 2, 2023
Sep
25
Extracting Suicide Causes and Discovering Annotation Inconsistencies in Death Investigation Notes through NLP Approaches
Yifan Peng, PhD
Assistant Professor, Division of Health Sciences Department of Population Health Sciences at Weill Cornell Medicine
September 25, 2023
Sep
18
Tumor Circadian Clock Strength Influences Metastatic Potential and Predicts Patient Prognosis in Luminal A Breast Cancer
Ron Anafi, MD, PhD
Assistant Professor of Medicine
University of Pennsylvania
September 18, 2023
Sep
11
Communicating Intersections of Data Science and Health Equity Principles through Outreach Activities
Simone Stanley, MS
Outreach and Workforce Development Program Manager
Georgetown University Medical Center
Innovation Center for Biomedical Informatics
September 11, 2023
May
15
Pausing Characteristics of People Who Stutter: An Automatic Speech Pause Analysis
Vishruta Yawatkar
Ph.D. student in Bioinformatics Data Science Program
University of Delaware
May 15, 2023
Genetic Insights from Anabaptist Founder Populations: Advancing Translational Medicine for Rare Diseases
Ashlin Callahan
MS student, Bioinformatics and Computational Biology Program
University of Delaware
May 15, 2023
May
08
Developmental origins of heterogeneity in cancer
Salil Garg, PhD
Assistant Professor in the Departments of Laboratory Medicine and Pathology at Yale University
May 8, 2023
Apr
24
The promise of multi-omics and machine learning in modeling CHO cell productivity
Guna Gurazada
Ph.D. student, Bioinformatics Data Science program
April 24, 2023
Local Sensitivity Analysis of A Generic Antiretroviral Drug Pharmacokinetic Model for More Efficient Drug Design
Yasaman (Yasmin) Moghadamnia
PhD Student, Bioinformatics Data Science
CBB T32 Fellow
April 24, 2023
Apr
17
Computational Screen to Identify Potential Targets for Immunotherapeutic Removal of Specific Cell Types
Avi Ma’ayan, PhD
Mount Sinai Endowed Professor in Bioinformatics
Professor, Department of Pharmacological Sciences
Director, Mount Sinai Center for Bioinformatics
April 17, 2023
Apr
10
Patient-sharing among Diabetes Healthcare Professionals: A Network Analysis Approach to Examine Collaboration
Mina Ostovari, PhD
Lead Research Investigator, Christiana Care Health Services, Inc
Affiliated Faculty, Data Science Institute, UD
April 10, 2023
Apr
03
Detecting Cerebral Palsy from Epigenetic Signals
Jonathan Hicks
Ph.D. Candidate, University of Delaware, Nemours Children’s Health
April 3, 2023
Uncovering Key Predictive Channels and Clinical Variables in the Gamma Band Auditory Steady-State Response in Early Stage Psychosis – a Longitudinal Study
Kristina Holton
Ph.D. candidate in Bioinformatics Data Science, University of Delaware
April 3, 2023
Mar
20
BiSA Career Panel
Panelists: Irene Rombel (BioCurie), Liang Sun (Boston Children’s Hospital), JuniPer Lake (Pacific Bioscience) and Madolyn MacDonald (University of Delaware)
March 20, 2023
Mar
13
Statin for the Prevention of Osteoarthritis
Dr. X. Lucas Lu
Associate Professor, Department of Mechanical Engineering, University of Delaware
March 13, 2023
Mar
06
Using NLP to Explore Long-term Functional Outcomes in Children following COVID-19
Drs. Cara Reedy and H. Timothy Bunnell
Research Data Scientist (Reedy)
Director, Center for Pediatric Auditory and Speech Sciences (Bunnell)
Neumors Children’s Hospital, Wilmington Delaware
March 6, 2023
Feb
27
Feb
20
Pursuit for Better Berries: Integration of Natural and Technological resources
Dr. Kalpalatha Melmaiee
Associate Professor at Delaware State University
February 20, 2023
Feb
13
The Delaware Microbiome Project
Alexa Bennett
Ph.D. candidate, Bioinformatics Data Sciences, UD
February 13, 2023
Biochemical and structural insights to marine viral phenotype from metagenomic sequence data
Rachel Keown
Graduate Student and CBB T32 Fellow, Bioinformatics Data Science, UD
February 13, 2023
Feb
06
A tale of two eggs: Application of small and big data in zebra shark conservation.
Dr. Jennifer Wyffels
Post Doctoral Researcher, Center for Bioinformatics & Computational Biology, UD
February 6, 2023
Dec
05
Personalized Medicine: Will It Work for Decreasing Age Related Morbidities?
Dr. Christopher Martens
Assistant Professor, Neurovascular aging lab, Kinesiology and Applied Physiology, UD
December 5, 2022
Nov
28
Optical Pooled Multi-omic Single Cell Screening
Dr. Jellert T. Gaublomme
Assistant Professor, Biological Sciences, Columbia University, NY
November 28, 2022
Nov
14
Role of ADAM9 in Colorectal Cancer
Neha Sindhu
PhD Student in Bioinformatics Data Science
November 14, 2022
Prediction of kinase-substrate phosphorylation interaction using knowledge graph embedding and machine learning technique
Manju Anandakrishnan
PhD Student in Bioinformatics Data Science
November 14, 2022
Nov
07
Influenza virus evolution and epidemiology: an overview
Dr. Anastasia Nikolskaya
Staff Scientist, NCBI, National Library of Medicine, NIH, MD
November 7, 2022
Oct
31
SPIDR: a novel and highly multiplexed method for mapping RNA-protein interactions to comprehensively study post-transcriptional gene expression regulation
Dr. Marko Jovanovic
Assistant Professor, Biological Sciences, Columbia University, NY
October 31, 2022
Oct
24
Data integration and evidence tracking in biomedical knowledgebases such as GlyGen and OncoMX
Dr. Raja Mazumder
Professor, Biochemistry and Molecular Medicine and Co-Director of The McCormick Genomic Proteomic Center at The George Washington University, DC
October 24, 2022
Oct
14
A Night in the Lentiviral Natural History Museum: How HIV and SIV Hijack Host Membrane Biology
Dr. James Hurley
Professor, University of California Berkeley, CA
October 14, 2022
Oct
10
Artificial intelligence and Natural Language Processing for Digital Epidemiology: Overcoming the Challenges of Real World Data
Dr. Graciela Gonzalez-Hernandez
Vice Chair Department of Computational Biomedicine, Cedars-Sinai Medical Center, CA
October 10, 2022
Oct
03
Data Harmonization and Integration in the Common Fund Data Ecosystem
Dr. Michelle Giglio
Associate Professor, Institute for Genome Sciences, University of Maryland Baltimore, MD
October 3, 2022
Sep
26
Hypothesis Generation with AGATHA: Accelerate Scientific Discovery with Deep Learning
Ilya Tyagin
PhD Student in Bioinformatics Data Science
September 26, 2022
Segmentation of Mouse Social Behavior Using an Unsupervised Machine Learning Approach
Joel Turk
PhD Student in Bioinformatics Data Science
September 26, 2022
Sep
19
Lens wound healing and the pathogenesis of posterior capsular opacification: Insights from RNAseq profiling
Dr. Melinda Duncan
Professor, Biological Sciences, University of Delaware
September 19, 2022
Sep
12
Modeling drug delivery in the lymph node
Dr. Ryan Zurakowski
Associate Professor, Department of Biomedical Engineering, University of Delaware, DE
September 12, 2022
Aug
29
Bioinformatics Graduate Student Orientation
Center for Bioinformatics and Computational Biology
August 29, 2022
Aug
26
Aug
09
To view seminars from previous years, visit the Past Seminars page.